Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015858664.1_cds_XP_016514021.1_26513
CDS Infomation

[gene=LOC107830865] [db_xref=GeneID:107830865] [protein=U-box domain-containing protein 35-like] [protein_id=XP_016514021.1] [location=complement(join(1991..2173,2343..3092,3586..4014,4280..4381,4765..5198,5656..5846,6044..6165,6246..6367,7307..7539,7789..7850))] [gbkey=CDS]
Sequence

ATGCCTGCTTTTAACTACATAAGAAGTCCATCACGTATTAAGAGAGCATTAAGTTGGAAA
GAAACTTTCATTACTGAAGAGGACTGGCAGAGTATGGAGGAGAACGATATATCGAAAATG
GAAGGGCAAGGAACAATGCAATCTCCACCATCTTCAGTTGTTGCAATAGCAATAAGTGGG
AACAAGAATAGCAAATATGTGGTGAAATGGGCATTGGACAAATTTGTTCCAGAGGGAGAG
ACGCGCTTCATGTTGCTACATGTCCGCCCTGAGATCACTGCAGTTCCAACTCCTATGGGA
AACTTGATTCCTATTGCACAAGTAAGAGAGGATGTAGCAGATGCCTTCAGGAAGGAAGTC
GAGTTACAAGCAAGCGAAAAGCTTCTTCCGTACAAGACGATGTTTATTAGGAGAAAGGTG
CAAGTAGGAGTTGTTCAAATTGAATCAAATGATGTTGTAAATGCAATAGCAGGGGTAGTA
TCTAAATGTTCTATCAACAAGCTTGTCATTGGAACCTCAACTCCTGGCCTATTTTCAAGG
GGAAGAAACTTATCTGCAAGTATCTCAGAAACTGCTCCAACCTTTTGCACAGTTTATGCT
GTGTCGAAGGGAAAACTGTCGTCAGTGCGTCCCTCGAGTTATGAAAACAATGGAGCTGTT
ACAGATGATAGTAGTGATACAAGTGGTTCTTCCAACAATTCTACAGGCCATAGTTTTAGC
TCTCAAGCAGAGAGGACGGATCACAGCTCAACTTCACCTGCTTCATACTCTCATTTGTAT
TCTCCTTCTCGTAAATTGCAACGCTATCAAGCTAAATCCCCAACACACCACGCCCTGCAA
ACACTTCTCCATAAGAGAACAAATATTGGTGAAACCATCCAATCTAGAAGTTCATCTATC
GAAATTGGAGAAGCGTTTCAAGCCCTCTCAATTAAAAACAATACTAAAAGAGCAAATCTG
AGTGAAGTCATCCATCCTAGAGCTATGACTATTGCTACTGGAGAAGCCGAGGATGACAAA
AGTTGCTATTTCAGTAGCTCAGGAATTACTGATCCCAATAGTCTTAATTCAAGTTTCAAG
AAAGCAAAAGTAGACAACCAACAATGGTCAACAAGTCAGTCTTCCAACTCAGATGCTCCA
ACAGATTCTTCATCTGGAAGTCAGGTTAACATCAATTATGACCTAGAAAAGCTGAGAATT
GAGCTCAGACATATTCAAGGAATGTATGCAATAGCTCAAACTGAGGCAATAGATGCTTCT
CGGAAGCTGAATGAATTTCAGAAGCTTCGAGTGGATGAAGCGAATAAACTGATGGAGATA
AACCTTAAGGAGGAGGAAGCCAAAGAATTAGCAGAACAAGAGAAGCTAAAATGTGAAGCA
GCAAAGAAAGAAGCAGACTATGCAATGGAATGTGCTGAAAGAGAAGTTGAGAAAAGAAGA
GCAGCAGAGAGCATTGCAAACCGGGAGGCTAGAACGAAAGAAAAGCTTGAGAAATCATTA
GTGCTACCTCTCCATCACTACCAGGAATTCACATGGGAAGAGATTGTGACGGCTAGCTCA
TCTTTCTCTGAGGATCTTAAGATAGGAATGGGATCATATGGAATGGTTTACAAGTGCTAT
TTGCATCATACATCTGCAGCAGTGAAAGTTCTTCATTCCGCTGAGGCTCATAGAACTAAG
CAATTTCAACAAGAGCTTGAAATATTGAGCACAATTCATCATCCTCACTTGTTAATTCTA
CTTGGCGCATGCCCTGAACGCGGTTGCCTAGTATACGAGTACATGGAGAATGGAAGTTTG
GAGGATAGGTTGATAAGGAAAAACAACACACCTCCACTTACATGGTTTGACAGGGTTCGG
ATAGCTTGGGAAGTTGCTTCTGCTCTAGTTTTCCTACATAACACAAAGCCAAAACCGATC
ATACACCGTGATTTAAAGCCAGCTAACATACTCCTTGATCATAACTTGGTGAGCAAAATT
GGAGATGTTGGACTTTCAACAATGGTTCAGTTAGACTCTTCCTCAGCAATGACGGCATAC
AAAGACACGAGTCCAGTTGGCACACTTTGCTATATAGATCCTGAGTATCAAAGGACAGGA
TTAGTCTCTACAAAATCTGATGTTTACGCATTTGGAATGGTCATTCTGCAGTTGCTTACT
GCGAAACGTGCCATAGCTTTAGCCCATATGGTAGAAATGGCAATCGAAGACGATAACTTA
GTGGAGTTGCTGGATCAAGAAGCCGGTGAATGGCCTATTGAAGAGACAAAGGAATTGGCT
GTGCTTGCTATAAAATGCACTGAGCTTCGACGTAGAGACAGACCTGACTTGAAAGATGAA
GTTCTCCCTGCTTTAGAGAGATTGAAAGAAGTCGCAGATAGAGCTCGAGATTTGATATAT
ATCCAATCTCCATCTCCTAGCCACTTCAAATGCCCCCTACTCAAGGAAGTGATGCAAGAC
CCTTGTGTTGCGGCTGATGGATACACTTATGACCGGAAGGCAATAGAGTCATGGCTAAAG
GACAACGATCACTCACCGGTGACTAATTCACCATTACCACATAAACACCTGCTGCCAAAT
TACACACTTCTCTCTGCTATCAAAGAATGGAAGTCGGGGAAACATTGA

Peptide Sequence

PEP ID

XP_016514021.1
PEP Infomation

PREDICTED: U-box domain-containing protein 35-like [Nicotiana tabacum]
Sequence

MPAFNYIRSPSRIKRALSWKETFITEEDWQSMEENDISKMEGQGTMQSPPSSVVAIAISG
NKNSKYVVKWALDKFVPEGETRFMLLHVRPEITAVPTPMGNLIPIAQVREDVADAFRKEV
ELQASEKLLPYKTMFIRRKVQVGVVQIESNDVVNAIAGVVSKCSINKLVIGTSTPGLFSR
GRNLSASISETAPTFCTVYAVSKGKLSSVRPSSYENNGAVTDDSSDTSGSSNNSTGHSFS
SQAERTDHSSTSPASYSHLYSPSRKLQRYQAKSPTHHALQTLLHKRTNIGETIQSRSSSI
EIGEAFQALSIKNNTKRANLSEVIHPRAMTIATGEAEDDKSCYFSSSGITDPNSLNSSFK
KAKVDNQQWSTSQSSNSDAPTDSSSGSQVNINYDLEKLRIELRHIQGMYAIAQTEAIDAS
RKLNEFQKLRVDEANKLMEINLKEEEAKELAEQEKLKCEAAKKEADYAMECAEREVEKRR
AAESIANREARTKEKLEKSLVLPLHHYQEFTWEEIVTASSSFSEDLKIGMGSYGMVYKCY
LHHTSAAVKVLHSAEAHRTKQFQQELEILSTIHHPHLLILLGACPERGCLVYEYMENGSL
EDRLIRKNNTPPLTWFDRVRIAWEVASALVFLHNTKPKPIIHRDLKPANILLDHNLVSKI
GDVGLSTMVQLDSSSAMTAYKDTSPVGTLCYIDPEYQRTGLVSTKSDVYAFGMVILQLLT
AKRAIALAHMVEMAIEDDNLVELLDQEAGEWPIEETKELAVLAIKCTELRRRDRPDLKDE
VLPALERLKEVADRARDLIYIQSPSPSHFKCPLLKEVMQDPCVAADGYTYDRKAIESWLK
DNDHSPVTNSPLPHKHLLPNYTLLSAIKEWKSGKH

Transcript Sequence

Gene sequence data has not been registered.